MolNFT v1 · #177632 · RNA
Crystal structure of the pepper aptamer in complex with HBC525
7EOO: “Crystal structure of the pepper aptamer in complex with HBC525”. X-ray diffraction, 2 ligands (J8X, MG). MolNFT v1 #177632 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EOO
- Type
- RNA
- Length
- 49 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- J8X, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 49 | — | — |
Ligands and binding sites
- J8X · (~{E})-2-(1,3-benzoxazol-2-yl)-3-[4-[2-hydroxyethyl(methyl)amino]phenyl]prop-2-enenitrile · ligand · chains A
- MG · Magnesium ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7EOO · Crystal structure of the Pepper aptamer in complex with HBC525 · the same entry in another collection · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EOO · PDBe 7EOO
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