MolNFT v1 · #177630 · RNA
Crystal structure of the pepper aptamer in complex with HBC508
7EOM: “Crystal structure of the pepper aptamer in complex with HBC508”. X-ray diffraction, 2 ligands (J8R, MG). MolNFT v1 #177630 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EOM
- Type
- RNA
- Length
- 49 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- J8R, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 49 | — | — |
Ligands and binding sites
- J8R · 4-[(~{Z})-1-cyano-2-[6-[2-hydroxyethyl(methyl) amino]pyridin-3-yl]ethenyl]benzenecarbonitrile · ligand · chains A
- MG · Magnesium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7EOM · Crystal structure of the Pepper aptamer in complex with HBC508 · the same entry in another collection · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EOM · PDBe 7EOM
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