MolNFT v1 · #177510 · protein
CRCLPP-S1
7EKO · ATP-dependent clp protease proteolytic subunit: “CRCLPP-S1”. Electron microscopy, 20 pockets (best druggability 0.77). MolNFT v1 #177510 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EKO
- Type
- protein
- Length
- 2,890 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP-dependent clp protease proteolytic subunit; ATP-dependent clp protease ATP-binding…
- EC
- 3.4.21.92
- UniProt
- A8INX1, A8IL21, A8IJ60, P42380, A0A2K3CXW8, A8IXD6, A8IS47, A8IH07, A8J353
- Pockets
- 20 · best druggability 0.77
Structure
electron microscopy · 13 distinct chains · 46% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-dependent clp protease proteolytic subunit | protein | 222 | 42% helix, 19% strand | A8INX1 |
| B, D | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 193 | 48% helix, 21% strand | A8IL21 |
| C, E | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 174 | 48% helix, 20% strand | A8IJ60 |
| F | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 172 | 48% helix, 21% strand | A8IL21 |
| G | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 179 | 46% helix, 21% strand | A8IJ60 |
| H | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 148 | 49% helix, 24% strand | P42380 |
| I | ATP-dependent clp protease proteolytic subunit | protein | 217 | 43% helix, 19% strand | A0A2K3CXW8 |
| J | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 165 | 56% helix, 21% strand | P42380 |
| K | ATP-dependent clp protease proteolytic subunit | protein | 233 | 43% helix, 15% strand | A8IXD6 |
| L | ATP-dependent clp protease proteolytic subunit | protein | 187 | 44% helix, 19% strand | A8IS47 |
| M | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 133 | 47% helix, 26% strand | P42380 |
| N | ATP-dependent clp protease proteolytic subunit | protein | 338 | 41% helix, 10% strand | A8IH07 |
| O | ATP-dependent clp protease ATP-binding subunit CLPT4, chloroplastic | protein | 162 | 59% helix, 4% strand | A8J353 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1175 | 0.77 | 0.79 | 115 | empty |
| 2 | 634 | 0.72 | 0.80 | 67 | empty |
| 3 | 326 | 0.68 | 0.82 | 42 | empty |
| 4 | 280 | 0.67 | 0.83 | 34 | empty |
| 5 | 560 | 0.66 | 0.77 | 56 | empty |
Interfaces
38 interfaces between chains.
- A–B · 2049 Ų buried · 24 hydrogen bonds · protein-protein
- K–L · 1710 Ų buried · 10 hydrogen bonds · protein-protein
- H–N · 1575 Ų buried · 20 hydrogen bonds · protein-protein
- B–C · 1539 Ų buried · 12 hydrogen bonds · protein-protein
- J–K · 1491 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 7EKO · CrClpP-S1 · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8INX1
- Every structure of UniProt A8IL21
- Every structure of UniProt A8IJ60
- Every structure of UniProt P42380
- Every structure of UniProt A0A2K3CXW8
- Every structure of UniProt A8IXD6
- Every structure of UniProt A8IS47
- Every structure of UniProt A8IH07
- Every structure of UniProt A8J353
- Elsewhere: RCSB PDB 7EKO · PDBe 7EKO · UniProt A8INX1 · UniProt A8IL21 · UniProt A8IJ60 · UniProt P42380 · UniProt A0A2K3CXW8 · UniProt A8IXD6 · UniProt A8IS47 · UniProt A8IH07 · UniProt A8J353
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