MolNFT v1 · #177412 · protein
Levansucrase from brenneria sp. enid 312
7EHT: “Levansucrase from brenneria sp. enid 312”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.52). MolNFT v1 #177412 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EHT
- Type
- protein
- Length
- 417 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Levansucrase
- EC
- 2.4.1.10
- UniProt
- G7LSK3
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Levansucrase (EC 2.4.1.10) | protein | 417 | 7% helix, 45% strand | G7LSK3 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 5 copies · chains A
- GOL · Glycerol · additive · 8 copies · chains A
- PGE · Triethylene glycol · additive · 4 copies · chains A
- P33 · 3,6,9,12,15,18-hexaoxaicosane-1,20-diol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 212 | 0.52 | 0.76 | 24 | GOL |
| 2 | 53 | 0.31 | 0.77 | 11 | empty |
| 3 | 61 | 0.31 | 0.75 | 15 | empty |
Compared structures
- 7EHT · Levansucrase from Brenneria sp. EniD 312 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G7LSK3
- Elsewhere: RCSB PDB 7EHT · PDBe 7EHT · UniProt G7LSK3
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