MolNFT v1 · #177409 · protein
Chitin oligosaccharide binding protein
7EHQ · Chitin oligosaccharide binding protein NAGB2: “Chitin oligosaccharide binding protein”. X-ray diffraction, 1 ligand (NAG), 5 pockets (best druggability 0.84). MolNFT v1 #177409 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 7EHQ
- Type
- protein
- Length
- 406 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chitin oligosaccharide binding protein NAGB2
- Ligands
- NAG
- Pockets
- 5 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chitin oligosaccharide binding protein NAGB2 | protein | 406 | 49% helix, 17% strand | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 314 | 0.84 | 0.94 | 46 | NAG |
| 2 | 132 | 0.46 | 0.77 | 22 | empty |
| 3 | 96 | 0.38 | 0.76 | 21 | empty |
| 4 | 84 | 0.34 | 0.75 | 23 | empty |
| 5 | 58 | 0.32 | 0.76 | 14 | empty |
Compared structures
- 7EHQ · Chitin oligosaccharide binding protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EHQ · PDBe 7EHQ
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