MolNFT v1 · #177362 · protein
FMN-bound form of yvic from lactococcus lactis subsp. lactis IL1403
7EG5 · FMN-binding protein: “FMN-bound form of yvic from lactococcus lactis subsp. lactis IL1403”. X-ray diffraction, 1 ligand (FMN), 2 pockets (best druggability 0.58). MolNFT v1 #177362 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7EG5
- Type
- protein
- Length
- 250 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- FMN-binding protein
- UniProt
- Q9CDV0
- Ligands
- FMN
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | FMN-binding protein | protein | 125 | 22% helix, 46% strand | Q9CDV0 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.58 | 0.79 | 35 | FMN |
| 2 | 201 | 0.58 | 0.80 | 33 | FMN |
Interfaces
1 interface between chains.
- A–B · 1020 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 7EG5 · FMN-bound form of YviC from Lactococcus lactis subsp. lactis Il1403 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9CDV0
- Elsewhere: RCSB PDB 7EG5 · PDBe 7EG5 · UniProt Q9CDV0
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