MolNFT v1 · #177188 · RNA
Crystal structure of SAM-I riboswitch with the actinomyces-1 K-turn
7EAF · RNA (94-mer): “Crystal structure of SAM-I riboswitch with the actinomyces-1 K-turn”. X-ray diffraction, 3 ligands (SAM, BA, NA), 4 pockets (best druggability 0.78). MolNFT v1 #177188 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7EAF
- Type
- RNA
- Length
- 94 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (94-mer)
- Ligands
- SAM, BA, NA
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (94-mer) | rna | 94 | — | — |
Ligands and binding sites
- SAM · S-adenosylmethionine · ligand · chains A
- BA · Barium ion · metal · 6 copies · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 745 | 0.78 | 0.83 | 47 | SAM, BA |
| 2 | 133 | 0.48 | 0.79 | 15 | BA |
| 3 | 71 | 0.38 | 0.79 | 14 | empty |
| 4 | 52 | 0.29 | 0.76 | 9 | empty |
Compared structures
- 7EAF · Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EAF · PDBe 7EAF
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