MolNFT v1 · #17715 · DNA
Crystal structure of a continuous three-dimensional DNA lattice from D(GGACAGATGGGAG)
1P1Y · 5'-D(*GP*GP*AP*(CBR)P*AP*GP*AP*(BRU)P*GP*GP*GP*AP*G)-3': “Crystal structure of a continuous three-dimensional DNA lattice from D(GGACAGATGGGAG)”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #17715 on GenesisL1: 3D structure, binding…
- PDB
- 1P1Y
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*GP*AP*(CBR)P*AP*GP*AP*(BRU)P*GP*GP*GP*AP*G)-3'
- Ligands
- MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | 5'-D(*GP*GP*AP*(CBR)P*AP*GP*AP*(BRU)P*GP*GP*GP*AP*G)-3' | dna | 12 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 1P1Y · Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG) · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1P1Y · PDBe 1P1Y
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