MolNFT v1 · #177092 · protein
The structure of chloroplastic tapgi
7E76 · Glucose-6-phosphate isomerase: “The structure of chloroplastic tapgi”. X-ray diffraction, 12 pockets (best druggability 0.82). MolNFT v1 #177092 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7E76
- Type
- protein
- Length
- 1,030 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucose-6-phosphate isomerase
- EC
- 5.3.1.9
- UniProt
- A0A3B6LNA8
- Pockets
- 12 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glucose-6-phosphate isomerase (EC 5.3.1.9) | protein | 515 | 51% helix, 12% strand | A0A3B6LNA8 |
Pockets
12 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 938 | 0.82 | 0.84 | 90 | empty |
| 2 | 412 | 0.72 | 0.83 | 64 | empty |
| 3 | 324 | 0.71 | 0.84 | 41 | empty |
| 4 | 107 | 0.47 | 0.80 | 19 | empty |
| 5 | 101 | 0.47 | 0.80 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 5884 Ų buried · 118 hydrogen bonds · protein-protein
Compared structures
- 7E76 · The structure of chloroplastic TaPGI · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3B6LNA8
- Elsewhere: RCSB PDB 7E76 · PDBe 7E76 · UniProt A0A3B6LNA8
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