Synechocystis GUN4 in complex with phytochrome

Structure

x-ray diffraction · 1 distinct chain · 59% helix, 2% strand (DSSP).

Ligands and binding sites

• UPB · 3-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-[(4~{R})-3-ethyl-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid · ligand · chains A
• CL · Chloride ion · ion · chains A
• GOL · Glycerol · additive · 2 copies · chains A
• TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Compared structures

• 7E2U · Synechocystis GUN4 in complex with phytochrome · the same entry in another collection · chain A against A, TM-score 1.00
• P72583 · AlphaFold monomer V2.0 prediction for YCF53-like protein (P72583) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P72583
• Elsewhere: RCSB PDB 7E2U · PDBe 7E2U · UniProt P72583