MolNFT v1 · #176812 · protein
Thermotoga maritima ferritin mutant-flal-L
7DYB: “Thermotoga maritima ferritin mutant-flal-L”. X-ray diffraction, 1 ligand (FE), 1 pocket (best druggability 0.73). MolNFT v1 #176812 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DYB
- Type
- protein
- Length
- 489 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferritin
- EC
- 1.16.3.2
- UniProt
- Q9X0L2
- Ligands
- FE
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H, A, B | Ferritin (EC 1.16.3.2) | protein | 163 | 77% helix, 0% strand | Q9X0L2 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 6 copies · chains H, A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.73 | 0.88 | 25 | empty |
Interfaces
2 interfaces between chains.
- A–B · 1317 Ų buried · 24 hydrogen bonds · protein-protein
- H–A · 940 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 7DYB · Thermotoga maritima ferritin mutant-FLAL-L · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X0L2
- Elsewhere: RCSB PDB 7DYB · PDBe 7DYB · UniProt Q9X0L2
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