MolNFT v1 · #176773 · protein
Trypsin-digested S protein of SARS-cov-2 bound with pd of ACE2 in the conformation 2 (2 up rbd and 2 pd bound)
7DX8: “Trypsin-digested S protein of SARS-cov-2 bound with pd of ACE2 in the conformation 2 (2 up rbd and 2 pd bound)”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #176773 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DX8
- Type
- protein
- Length
- 4,174 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2, Q9BYF1
- Ligands
- NAG
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1007 | — | P0DTC2 |
| B | — | protein | 971 | — | P0DTC2 |
| C | — | protein | 1006 | — | P0DTC2 |
| D, E | — | protein | 595 | — | Q9BYF1 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 93 copies · chains A, B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DX8 · Trypsin-digested S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 2 (2… · the same entry in another collection · chain A against A, TM-score 1.00
- 3SCJ · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain E against A, TM-score 0.99
- 3SCJ · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain E against A, TM-score 0.99
- 3SCK · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain E against A, TM-score 0.99
- 3SCK · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain E against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Every structure of UniProt Q9BYF1
- Elsewhere: RCSB PDB 7DX8 · PDBe 7DX8 · UniProt P0DTC2 · UniProt Q9BYF1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.