MolNFT v1 · #176695 · protein
Structure of sulfolobus solfataricus segb protein
7DUV: “Structure of sulfolobus solfataricus segb protein”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.47). MolNFT v1 #176695 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DUV
- Type
- protein
- Length
- 220 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Segb
- UniProt
- Q981B2
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 71% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Segb | protein | 74 | 72% helix, 0% strand | Q981B2 |
| C | Segb | protein | 72 | 71% helix, 7% strand | Q981B2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 228 | 0.47 | 0.73 | 29 | empty |
Interfaces
3 interfaces between chains.
- B–C · 2564 Ų buried · 18 hydrogen bonds · protein-protein
- A–C · 180 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 20 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7DUV · Structure of Sulfolobus solfataricus SegB protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q981B2
- Elsewhere: RCSB PDB 7DUV · PDBe 7DUV · UniProt Q981B2
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