MolNFT v1 · #176672 · protein
Crystal structure of the rationally designed MKDPBB_SYM1 protein
7DU7: “Crystal structure of the rationally designed MKDPBB_SYM1 protein”. X-ray diffraction, 1 pocket (best druggability 0.40). MolNFT v1 #176672 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DU7
- Type
- protein
- Length
- 172 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MKDPBB_SYM1 protein
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | MKDPBB_SYM1 protein | protein | 86 | 23% helix, 41% strand | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.40 | 0.75 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 278 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 7DU7 · Crystal structure of the rationally designed mkDPBB_sym1 protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7DU7 · PDBe 7DU7
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