MolNFT v1 · #176597 · protein
Crystal structure of aspergillus oryzae RIB2 deaminase (C-terminal deletion mutant) at pH 4.6
7DRZ · CMP/DCMP-type deaminase domain-containing protein: “Crystal structure of aspergillus oryzae RIB2 deaminase (C-terminal deletion mutant) at pH 4.6”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.42). MolNFT v1…
- PDB
- 7DRZ
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CMP/DCMP-type deaminase domain-containing protein
- UniProt
- Q2UFA9
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CMP/DCMP-type deaminase domain-containing protein | protein | 186 | 35% helix, 23% strand | Q2UFA9 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.42 | 0.81 | 17 | empty |
| 2 | 54 | 0.34 | 0.78 | 17 | empty |
Compared structures
- 7DRZ · Crystal structure of Aspergillus oryzae Rib2 deaminase (C-terminal deletion mutant) at pH… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2UFA9
- Elsewhere: RCSB PDB 7DRZ · PDBe 7DRZ · UniProt Q2UFA9
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