MolNFT v1 · #176587 · protein
Structure of ATP-grasp ligase psnb complexed with phosphomimetic variant of minimal precursor, mg, and ADP
7DRP: “Structure of ATP-grasp ligase psnb complexed with phosphomimetic variant of minimal precursor, mg, and ADP”. X-ray diffraction, 2 ligands (ADP, MG). MolNFT v1 #176587 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DRP
- Type
- protein
- Length
- 1,247 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A6G4D7, A6GH40
- Ligands
- ADP, MG
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 312 | — | A6G4D7 |
| B | — | protein | 295 | — | A6G4D7 |
| C | — | protein | 311 | — | A6G4D7 |
| D | — | protein | 296 | — | A6G4D7 |
| F | — | protein | 18 | — | A6GH40 |
| E | — | protein | 15 | — | A6GH40 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 8 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DRP · Structure of ATP-grasp ligase PsnB complexed with phosphomimetic variant of minimal… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6G4D7
- Every structure of UniProt A6GH40
- Elsewhere: RCSB PDB 7DRP · PDBe 7DRP · UniProt A6G4D7 · UniProt A6GH40
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