MolNFT v1 · #176484 · protein
Crystal structure of catabolite repressor activator (apo)
7DOB · Catabolite REPRESSOR/ACTIVATOR: “Crystal structure of catabolite repressor activator (apo)”. X-ray diffraction, 2 ligands (MG, PO4), 2 pockets (best druggability 0.61). MolNFT v1 #176484 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7DOB
- Type
- protein
- Length
- 277 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Catabolite REPRESSOR/ACTIVATOR
- UniProt
- A0A454A0X5
- Ligands
- MG, PO4
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Catabolite REPRESSOR/ACTIVATOR | protein | 277 | 39% helix, 24% strand | A0A454A0X5 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
- PO4 · Phosphate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 463 | 0.61 | 0.75 | 44 | PO4 |
| 2 | 105 | 0.49 | 0.81 | 18 | EDO |
Compared structures
- 7DOB · Crystal structure of Catabolite repressor activator (Apo) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A454A0X5
- Elsewhere: RCSB PDB 7DOB · PDBe 7DOB · UniProt A0A454A0X5
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