MolNFT v1 · #176469 · protein
Structure of brucella abortus saga
7DNP · Secretion activator protein, hypothetical: “Structure of brucella abortus saga”. X-ray diffraction, 1 ligand (H9U), 1 pocket (best druggability 0.57). MolNFT v1 #176469 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DNP
- Type
- protein
- Length
- 174 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Secretion activator protein, hypothetical
- UniProt
- Q57DE3
- Ligands
- H9U
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 65% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Secretion activator protein, hypothetical | protein | 174 | 65% helix, 3% strand | Q57DE3 |
Ligands and binding sites
- H9U · (2R)-2-[[(2S)-2-[[(2R)-2-[(2R,3S,4R,5R,6S)-5-acetamido-3-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-(hydroxymethyl)-6-oxidanyl-oxan-4-yl]oxypropanoyl]amino]propanoyl]amino]pentanedioic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 328 | 0.57 | 0.76 | 39 | H9U |
Compared structures
- 7DNP · Structure of Brucella abortus SagA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57DE3
- Elsewhere: RCSB PDB 7DNP · PDBe 7DNP · UniProt Q57DE3
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