MolNFT v1 · #176396 · protein
Crystal structure of ALBA1 from trypanosoma brucei
7DL8 · Alba-domain protein: “Crystal structure of ALBA1 from trypanosoma brucei”. X-ray diffraction, 1 pocket (best druggability 0.75). MolNFT v1 #176396 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DL8
- Type
- protein
- Length
- 431 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alba-domain protein
- UniProt
- A0A3L6KSX9
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 4 distinct chains · 49% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alba-domain protein | protein | 114 | 48% helix, 30% strand | A0A3L6KSX9 |
| B | Alba-domain protein | protein | 110 | 51% helix, 28% strand | A0A3L6KSX9 |
| C | Alba-domain protein | protein | 98 | 48% helix, 32% strand | A0A3L6KSX9 |
| D | Alba-domain protein | protein | 109 | 50% helix, 29% strand | A0A3L6KSX9 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1073 | 0.75 | 0.77 | 81 | empty |
Interfaces
6 interfaces between chains.
- C–D · 1184 Ų buried · 20 hydrogen bonds · protein-protein
- A–D · 759 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 750 Ų buried · 12 hydrogen bonds · protein-protein
- A–B · 227 Ų buried · 3 hydrogen bonds · protein-protein
- B–D · 60 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7DL8 · Crystal structure of ALBA1 from Trypanosoma brucei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3L6KSX9
- Elsewhere: RCSB PDB 7DL8 · PDBe 7DL8 · UniProt A0A3L6KSX9
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