MolNFT v1 · #176373 · protein
De novo design protein XM2H
7DKK: “De novo design protein XM2H”. X-ray diffraction, 2 pockets (best druggability 0.58). MolNFT v1 #176373 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DKK
- Type
- protein
- Length
- 356 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- De novo design protein XM2H
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | De novo design protein XM2H | protein | 89 | 43% helix, 31% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.58 | 0.88 | 19 | empty |
| 2 | 53 | 0.26 | 0.74 | 16 | empty |
Interfaces
3 interfaces between chains.
- B–C · 576 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 573 Ų buried · 10 hydrogen bonds · protein-protein
- A–D · 525 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 7DKK · De novo design protein XM2H · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7DKK · PDBe 7DKK
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