MolNFT v1 · #176356 · protein
Crystal structure of SARS-cov-2 spike rbd in complex with MW07 Fab
7DK2: “Crystal structure of SARS-cov-2 spike rbd in complex with MW07 Fab”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #176356 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DK2
- Type
- protein
- Length
- 2,503 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 223 | — | — |
| B, H, K | — | protein | 214 | — | — |
| C, L | — | protein | 191 | — | P0DTC2 |
| D | — | protein | 222 | — | — |
| E | — | protein | 213 | — | — |
| F | — | protein | 190 | — | P0DTC2 |
| G, J | — | protein | 221 | — | — |
| I | — | protein | 189 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains C, F, I, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DK2 · Crystal structure of SARS-CoV-2 Spike RBD in complex with MW07 Fab · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7DK2 · PDBe 7DK2 · UniProt P0DTC2
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