MolNFT v1 · #176237 · protein
Crystal structure of xanthomonas oryzae clpp S68Y in complex with ADEP4.
7DFU: “Crystal structure of xanthomonas oryzae clpp S68Y in complex with ADEP4.”. X-ray diffraction, 3 ligands (EZA, MG, CL). MolNFT v1 #176237 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DFU
- Type
- protein
- Length
- 1,296 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0M1K022
- Ligands
- EZA, MG, CL
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 191 | — | A0A0M1K022 |
| B | — | protein | 182 | — | A0A0M1K022 |
| C | — | protein | 185 | — | A0A0M1K022 |
| D | — | protein | 189 | — | A0A0M1K022 |
| E | — | protein | 180 | — | A0A0M1K022 |
| F | — | protein | 188 | — | A0A0M1K022 |
| G | — | protein | 181 | — | A0A0M1K022 |
Ligands and binding sites
- EZA · N-[(6as,12s,15as,17r,21r,23as)-17,21-dimethyl-6,11,15, 20,23-pentaoxooctadecahydro-2H,6H,11H,15H-pyrido[2,1-i]dipyrrolo[2,1-C:2',1'-L][1,4,7,10, 13]oxatetraazacyclohexadecin-12-yl]-3,5-difluoro-nalpha-[(2E)-hept-2-enoyl]-L-phenylalaninamide · ligand · 7 copies · chains A, B, C, D, E, F, G
- MG · Magnesium ion · metal · chains B
- CL · Chloride ion · ion · 7 copies · chains A, B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DFU · Crystal structure of Xanthomonas oryzae ClpP S68Y in complex with ADEP4. · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0M1K022
- Elsewhere: RCSB PDB 7DFU · PDBe 7DFU · UniProt A0A0M1K022
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