MolNFT v1 · #17611 · protein
Crystal structure of the phosphorolytic exoribonuclease RNase pH from bacillus subtilis
1OYS · Ribonuclease pH: “Crystal structure of the phosphorolytic exoribonuclease RNase pH from bacillus subtilis”. X-ray diffraction, 1 pocket (best druggability 0.45). MolNFT v1 #17611 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1OYS
- Type
- protein
- Length
- 213 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonuclease pH
- EC
- 2.7.7.56
- UniProt
- P28619
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonuclease pH (EC 2.7.7.56) | protein | 213 | 35% helix, 32% strand | P28619 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 141 | 0.45 | 0.77 | 22 | empty |
Compared structures
- 1OYS · Crystal Structure of the Phosphorolytic Exoribonuclease RNase PH from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- P28619 · AlphaFold monomer V2.0 prediction for ribonuclease pH (P28619) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28619
- Elsewhere: RCSB PDB 1OYS · PDBe 1OYS · UniProt P28619
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