MolNFT v1 · #176067 · protein

Adenosine triphosphate phosphoribosyltransferase from vibrio cholerae in complex with ATP and prpp

7DAH: “Adenosine triphosphate phosphoribosyltransferase from vibrio cholerae in complex with ATP and prpp”. X-ray diffraction, 4 ligands (ATP, PRP, MG). MolNFT v1 #176067 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7DAH
Type: protein
Length: 1,735 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: C3LU29
Ligands: ATP, PRP, MG, PO4

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	288	—	C3LU29
B	—	protein	292	—	C3LU29
C	—	protein	288	—	C3LU29
D	—	protein	287	—	C3LU29
E	—	protein	293	—	C3LU29
F	—	protein	287	—	C3LU29

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains C, F
PRP · 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose · ligand · 2 copies · chains A, C, D, F
MG · Magnesium ion · metal · 2 copies · chains C, F
PO4 · Phosphate ion · ion · 2 copies · chains A, D
EDO · 1,2-ethanediol · additive · 8 copies · chains A, C, D, F, E
PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, D
GOL · Glycerol · additive · 2 copies · chains A, C, D, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7DAH · Adenosine triphosphate phosphoribosyltransferase from Vibrio cholerae in complex with ATP… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C3LU29
Elsewhere: RCSB PDB 7DAH · PDBe 7DAH · UniProt C3LU29

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