MolNFT v1 · #176009 · protein
The structure of nucleotide phosphatase SA1684 complex with GDP analogue from staphylococcus aureus
7D8Q: “The structure of nucleotide phosphatase SA1684 complex with GDP analogue from staphylococcus aureus”. X-ray diffraction, 2 ligands (GZF, MG). MolNFT v1 #176009 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D8Q
- Type
- protein
- Length
- 174 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2YU19
- Ligands
- GZF, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 174 | — | Q2YU19 |
Ligands and binding sites
- GZF · [(2R,3R,4S,5S)-5-(2-azanyl-6-oxidanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl bis(oxidanyl) phosphinothioyl hydrogen phosphate · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7D8Q · The structure of nucleotide phosphatase Sa1684 complex with GDP analogue from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q2YU19 · AlphaFold monomer V2.0 prediction for UPF0374 protein SAB1800C (Q2YU19) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2YU19
- Elsewhere: RCSB PDB 7D8Q · PDBe 7D8Q · UniProt Q2YU19
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