MolNFT v1 · #176005 · protein
Crystal structure of dyp
7D8M · Dye-decolorizing peroxidase: “Crystal structure of dyp”. X-ray diffraction, 2 ligands (HEM, OXY), 1 pocket (best druggability 0.81). MolNFT v1 #176005 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D8M
- Type
- protein
- Length
- 451 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dye-decolorizing peroxidase
- UniProt
- A0A2P1C6N4
- Ligands
- HEM, OXY
- Pockets
- 1 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dye-decolorizing peroxidase | protein | 451 | 32% helix, 18% strand | A0A2P1C6N4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 694 | 0.81 | 0.85 | 91 | HEM, OXY |
Compared structures
- 7D8M · Crystal structure of DyP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2P1C6N4
- Elsewhere: RCSB PDB 7D8M · PDBe 7D8M · UniProt A0A2P1C6N4
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