MolNFT v1 · #175989 · protein
Crystal structure of ZEBRAFISHPHF14-pzp
7D86 · Phd finger protein 14: “Crystal structure of ZEBRAFISHPHF14-pzp”. X-ray diffraction, 2 ligands (ZN, MG), 4 pockets (best druggability 0.59). MolNFT v1 #175989 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D86
- Type
- protein
- Length
- 185 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phd finger protein 14
- UniProt
- A0A286Y9D1
- Ligands
- ZN, MG
- Pockets
- 4 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phd finger protein 14 | protein | 185 | 27% helix, 14% strand | A0A286Y9D1 |
Ligands and binding sites
- ZN · Zinc ion · metal · 5 copies · chains A
- MG · Magnesium ion · metal · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.59 | 0.84 | 29 | empty |
| 2 | 112 | 0.50 | 0.81 | 33 | empty |
| 3 | 92 | 0.35 | 0.75 | 24 | MG |
| 4 | 57 | 0.32 | 0.76 | 12 | EDO |
Compared structures
- 7D86 · Crystal Structure of zebrafishPHF14-PZP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A286Y9D1
- Elsewhere: RCSB PDB 7D86 · PDBe 7D86 · UniProt A0A286Y9D1
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