MolNFT v1 · #175984 · RNA

Crystal structure of the DOMAIN2 of NAD+ riboswitch with nicotinamide adenine dinucleotide (NAD+)

7D81 · 832GAAA (50-mer): “Crystal structure of the DOMAIN2 of NAD+ riboswitch with nicotinamide adenine dinucleotide (NAD+)”. X-ray diffraction, 2 ligands (NAD, MG), 1 pocket (best druggability 0.70). MolNFT v1 #175984 on GenesisL1: 3D…

PDB: 7D81
Type: RNA
Length: 50 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 832GAAA (50-mer)
Ligands: NAD, MG
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	832GAAA (50-mer)	rna	50	—	—

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A
MG · Magnesium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	901	0.70	0.76	40	MG

Compared structures

7D81 · Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7D81 · PDBe 7D81

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