MolNFT v1 · #175970 · protein
The crystal structure of SARS-cov-2 papain-like protease in complex with YM155
7D7L: “The crystal structure of SARS-cov-2 papain-like protease in complex with YM155”. X-ray diffraction, 4 ligands (GXU, CFF, ZN). MolNFT v1 #175970 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D7L
- Type
- protein
- Length
- 624 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- GXU, CFF, ZN, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 312 | — | P0DTD1 |
Ligands and binding sites
- GXU · 1-(2-methoxyethyl)-2-methyl-3-(pyrazin-2-ylmethyl) benzo[f]benzimidazol-3-ium-4,9-dione · ligand · 5 copies · chains A, B
- CFF · Caffeine · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 9 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7D7L · The crystal structure of SARS-CoV-2 papain-like protease in complex with YM155 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7D7L · PDBe 7D7L · UniProt P0DTD1
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