MolNFT v1 · #175925 · protein

Cystein protease domain from martx toxin

7D5Y: “Cystein protease domain from martx toxin”. X-ray diffraction, 1 pocket (best druggability 0.41). MolNFT v1 #175925 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7D5Y
Type: protein
Length: 210 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Martx
UniProt: A0A023NA98
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Martx	protein	210	26% helix, 31% strand	A0A023NA98

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	111	0.41	0.76	18	GOL

Compared structures

7D5Y · Cystein protease domain from MARTX toxin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A023NA98
Elsewhere: RCSB PDB 7D5Y · PDBe 7D5Y · UniProt A0A023NA98

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