MolNFT v1 · #175915 · protein

Crystal structure of inositol dehydrogenase homolog complexed with NAD+ from azotobacter vinelandii

7D5M · Oxidoreductase: “Crystal structure of inositol dehydrogenase homolog complexed with NAD+ from azotobacter vinelandii”. X-ray diffraction, 1 ligand (NAD), 2 pockets (best druggability 0.74). MolNFT v1 #175915 on GenesisL1: 3D…

PDB: 7D5M
Type: protein
Length: 389 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Oxidoreductase
UniProt: C1DLC3
Ligands: NAD
Pockets: 2 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Oxidoreductase	protein	389	40% helix, 22% strand	C1DLC3

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	582	0.74	0.81	71	NAD
2	412	0.64	0.78	48	empty

Compared structures

7D5M · Crystal structure of inositol dehydrogenase homolog complexed with NAD+ from Azotobacter… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C1DLC3
Elsewhere: RCSB PDB 7D5M · PDBe 7D5M · UniProt C1DLC3

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