MolNFT v1 · #175899 · protein
Crystal structure of LYS170 cbd
7D55 · Putative N-acetylmuramoyl-L-alanine amidase: “Crystal structure of LYS170 cbd”. X-ray diffraction, 1 pocket (best druggability 0.70). MolNFT v1 #175899 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D55
- Type
- protein
- Length
- 348 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative N-acetylmuramoyl-L-alanine amidase
- UniProt
- A0A2Z6FZW5
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Putative N-acetylmuramoyl-L-alanine amidase | protein | 87 | 26% helix, 30% strand | A0A2Z6FZW5 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.70 | 0.85 | 35 | empty |
Interfaces
4 interfaces between chains.
- B–C · 897 Ų buried · 10 hydrogen bonds · protein-protein
- B–D · 870 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 862 Ų buried · 10 hydrogen bonds · protein-protein
- A–D · 862 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7D55 · Crystal structure of lys170 CBD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2Z6FZW5
- Elsewhere: RCSB PDB 7D55 · PDBe 7D55 · UniProt A0A2Z6FZW5
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