MolNFT v1 · #175842 · protein
FLR-APO
7D39 · CD1: “FLR-APO”. X-ray diffraction, 1 ligand (FMN), 2 pockets (best druggability 0.62). MolNFT v1 #175842 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D39
- Type
- protein
- Length
- 288 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CD1
- UniProt
- A0A174NXS8
- Ligands
- FMN
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CD1 | protein | 288 | 46% helix, 19% strand | A0A174NXS8 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.62 | 0.81 | 26 | empty |
| 2 | 52 | 0.27 | 0.74 | 13 | empty |
Modifications
Observed in the structure: 11 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 7D39 · FLR-apo · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A174NXS8
- Elsewhere: RCSB PDB 7D39 · PDBe 7D39 · UniProt A0A174NXS8
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