MolNFT v1 · #175834 · DNA
The tba-PB2+ complex in P41212 space group
7D31 · DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)- 3'): “The tba-PB2+ complex in P41212 space group”. X-ray diffraction, 1 ligand (PB). MolNFT v1 #175834 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D31
- Type
- DNA
- Length
- 30 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)- 3')
- Ligands
- PB
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)- 3') | dna | 15 | — | — |
Ligands and binding sites
- PB · Lead (II) ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 732 Ų buried · 30 hydrogen bonds · nucleic-nucleic
Compared structures
- 7D31 · The TBA-Pb2+ complex in P41212 space group · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7D31 · PDBe 7D31
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