MolNFT v1 · #175829 · protein
Crystal structure of PHIT/PHISTA-like subfamily PF3D7_1372300 protein from plasmodium falciparum
7D2W · Presan domain-containing protein: “Crystal structure of PHIT/PHISTA-like subfamily PF3D7_1372300 protein from plasmodium falciparum”. X-ray diffraction, 1 ligand (HG), 4 pockets (best druggability 0.40). MolNFT v1 #175829 on…
- PDB
- 7D2W
- Type
- protein
- Length
- 250 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Presan domain-containing protein
- UniProt
- A0A143ZZR8
- Ligands
- HG
- Pockets
- 4 · best druggability 0.40
Structure
x-ray diffraction · 2 distinct chains · 80% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Presan domain-containing protein | protein | 125 | 80% helix, 0% strand | A0A143ZZR8 |
| B | Presan domain-containing protein | protein | 125 | 80% helix, 0% strand | A0A143ZZR8 |
Ligands and binding sites
- HG · Mercury (II) ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 132 | 0.40 | 0.74 | 23 | empty |
| 2 | 133 | 0.39 | 0.74 | 21 | empty |
| 3 | 82 | 0.33 | 0.74 | 16 | HG |
| 4 | 64 | 0.31 | 0.75 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 784 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7D2W · Crystal structure of PHIT/PHISTa-like subfamily PF3D7_1372300 protein from plasmodium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A143ZZR8
- Elsewhere: RCSB PDB 7D2W · PDBe 7D2W · UniProt A0A143ZZR8
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