MolNFT v1 · #175783 · protein
Crystal structure of glyceraldehyde-3-phosphate dehydrogenase GAPDH from clostridium beijerinckii
7D1G: “Crystal structure of glyceraldehyde-3-phosphate dehydrogenase GAPDH from clostridium beijerinckii”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.63). MolNFT v1 #175783 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7D1G
- Type
- protein
- Length
- 333 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glyceraldehyde-3-phosphate dehydrogenase
- EC
- 1.2.1.-
- UniProt
- A6LR04
- Ligands
- MG
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.-) | protein | 333 | 27% helix, 27% strand | A6LR04 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 507 | 0.63 | 0.76 | 68 | BME, MG |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 7D1G · Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase GAPDH from Clostridium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6LR04
- Elsewhere: RCSB PDB 7D1G · PDBe 7D1G · UniProt A6LR04
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