MolNFT v1 · #175775 · protein

Crystal structure of acidobacteriales bacterium glutaminyl cyclase

7D18 · Peptidase M28: “Crystal structure of acidobacteriales bacterium glutaminyl cyclase”. X-ray diffraction, 3 ligands (ZN, NA, SO4), 2 pockets (best druggability 0.44). MolNFT v1 #175775 on GenesisL1: 3D structure, binding sites and…

PDB: 7D18
Type: protein
Length: 293 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptidase M28
UniProt: A0A1Q3QTC5
Ligands: ZN, NA, SO4
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptidase M28	protein	293	40% helix, 22% strand	A0A1Q3QTC5

Ligands and binding sites

ZN · Zinc ion · metal · chains A
NA · Sodium ion · metal · chains A
SO4 · Sulfate ion · ion · 7 copies · chains A
GOL · Glycerol · additive · 5 copies · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.44	0.78	15	empty
2	89	0.36	0.75	22	empty

Compared structures

7D18 · Crystal structure of Acidobacteriales bacterium glutaminyl cyclase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1Q3QTC5
Elsewhere: RCSB PDB 7D18 · PDBe 7D18 · UniProt A0A1Q3QTC5

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