GL1X · GenesisL1 explorer

MolNFT v1 · #175747 · protein

Crystal structure of FIP200 CLAW/P-CCPG1 FIR2

7D0E · RB1-inducible coiled-coil protein 1: “Crystal structure of FIP200 CLAW/P-CCPG1 FIR2”. X-ray diffraction, 1 ligand (GO9). MolNFT v1 #175747 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7D0E
Type
protein
Length
107 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
RB1-inducible coiled-coil protein 1; Cell cycle progression protein 1 FIR2
UniProt
Q8TDY2, Q9ULG6
Ligands
GO9

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 39% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ARB1-inducible coiled-coil protein 1protein966% helix, 39% strandQ8TDY2
BCell cycle progression protein 1 FIR2protein110% helix, 45% strandQ9ULG6

Ligands and binding sites

  • GO9 · 3-(2-hydroxyethyloxy)-2-[2-(2-hydroxyethyloxy) ethoxymethyl]-2-(2-hydroxyethyloxymethyl)propan-1-ol · ligand · chains A
  • PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 617 Ų buried · 15 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 modified (phosphorylation).

Compared structures

  • 7D0E · Crystal structure of FIP200 Claw/p-CCPG1 FIR2 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q8TDY2 · AlphaFold monomer V2.0 prediction for RB1-inducible coiled-coil protein 1 (Q8TDY2) · a predicted model of the same protein · chain A against A, TM-score 0.92
  • Q9ULG6 · AlphaFold monomer V2.0 prediction for cell cycle progression protein 1 (Q9ULG6) · a predicted model of the same protein · chain B against A, TM-score 0.22

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