MolNFT v1 · #175740 · protein
Cryo EM structure of the nucleotide free acinetobacter mlafedb complex
7D06: “Cryo EM structure of the nucleotide free acinetobacter mlafedb complex”. Electron microscopy, 1 ligand (PGV). MolNFT v1 #175740 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D06
- Type
- protein
- Length
- 2,374 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- V5V9F4, A0A086HZU3, V5V9K5, V5V921
- Ligands
- PGV
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 256 | — | V5V9F4 |
| B, E | — | protein | 263 | — | A0A086HZU3 |
| C, F | — | protein | 95 | — | V5V9K5 |
| G, H, I, J, K, L | — | protein | 191 | — | V5V921 |
Ligands and binding sites
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate · ligand · 12 copies · chains A, D, H, I, G, L, K, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7D06 · Cryo EM structure of the nucleotide free Acinetobacter MlaFEDB complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V5V9F4
- Every structure of UniProt A0A086HZU3
- Every structure of UniProt V5V9K5
- Every structure of UniProt V5V921
- Elsewhere: RCSB PDB 7D06 · PDBe 7D06 · UniProt V5V9F4 · UniProt A0A086HZU3 · UniProt V5V9K5 · UniProt V5V921
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