MolNFT v1 · #175626 · protein
Root induced secreted protein TSP1 from biocontrol fungi trichoderma virens
7CWP · Root induced signalling protein: “Root induced secreted protein TSP1 from biocontrol fungi trichoderma virens”. X-ray diffraction, 4 pockets (best druggability 0.60). MolNFT v1 #175626 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7CWP
- Type
- protein
- Length
- 511 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Root induced signalling protein
- UniProt
- G9MQD3
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 4 distinct chains · 8% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Root induced signalling protein | protein | 125 | 8% helix, 49% strand | G9MQD3 |
| B | Root induced signalling protein | protein | 128 | 8% helix, 48% strand | G9MQD3 |
| C | Root induced signalling protein | protein | 129 | 10% helix, 49% strand | G9MQD3 |
| D | Root induced signalling protein | protein | 129 | 5% helix, 49% strand | G9MQD3 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 163 | 0.60 | 0.84 | 34 | empty |
| 2 | 51 | 0.35 | 0.79 | 17 | empty |
| 3 | 54 | 0.30 | 0.76 | 19 | empty |
| 4 | 75 | 0.29 | 0.73 | 21 | empty |
Interfaces
5 interfaces between chains.
- C–D · 1734 Ų buried · 21 hydrogen bonds · protein-protein
- A–D · 276 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 244 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 139 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 26 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 7CWP · Root induced Secreted protein Tsp1 from Biocontrol fungi Trichoderma virens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G9MQD3
- Elsewhere: RCSB PDB 7CWP · PDBe 7CWP · UniProt G9MQD3
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