MolNFT v1 · #175619 · protein
Crystal structure of beta-galactosidase II from bacillus circulans
7CWI: “Crystal structure of beta-galactosidase II from bacillus circulans”. X-ray diffraction, 2 ligands (SO4, CL), 8 pockets (best druggability 0.76). MolNFT v1 #175619 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7CWI
- Type
- protein
- Length
- 803 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-galactosidase
- Ligands
- SO4, CL
- Pockets
- 8 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-galactosidase | protein | 803 | 14% helix, 39% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.76 | 0.99 | 22 | GOL |
| 2 | 641 | 0.72 | 0.80 | 54 | GOL |
| 3 | 420 | 0.65 | 0.78 | 40 | empty |
| 4 | 306 | 0.57 | 0.77 | 44 | empty |
| 5 | 293 | 0.56 | 0.77 | 37 | empty |
Compared structures
- 7CWI · Crystal structure of beta-galactosidase II from Bacillus circulans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7CWI · PDBe 7CWI
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