MolNFT v1 · #175553 · protein
The structure of yoeb dimer from staphylococcus aureus
7CUA: “The structure of yoeb dimer from staphylococcus aureus”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.69). MolNFT v1 #175553 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7CUA
- Type
- protein
- Length
- 261 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yoeb
- UniProt
- Q2G286
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, B | Yoeb | protein | 87 | 34% helix, 29% strand | Q2G286 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.69 | 0.86 | 33 | empty |
| 2 | 58 | 0.38 | 0.80 | 15 | empty |
Interfaces
3 interfaces between chains.
- A–B · 769 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 338 Ų buried · 8 hydrogen bonds · protein-protein
- C–B · 168 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7CUA · The structure of YoeB dimer from Staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2G286
- Elsewhere: RCSB PDB 7CUA · PDBe 7CUA · UniProt Q2G286
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