MolNFT v1 · #175067 · protein

Drosophila melanogaster krimper ETUD1 apo structure

7CFB · FI20010P1: “Drosophila melanogaster krimper ETUD1 apo structure”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.72). MolNFT v1 #175067 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7CFB
Type: protein
Length: 388 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: FI20010P1
UniProt: A1ZAC4
Ligands: SO4
Pockets: 3 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 21% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	FI20010P1	protein	208	24% helix, 33% strand	A1ZAC4
B	FI20010P1	protein	180	17% helix, 38% strand	A1ZAC4

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	580	0.72	0.80	58	empty
2	76	0.40	0.78	18	empty
3	88	0.40	0.77	20	empty

Interfaces

1 interface between chains.

A–B · 1000 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

7CFB · Drosophila melanogaster Krimper eTud1 apo structure · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A1ZAC4
Elsewhere: RCSB PDB 7CFB · PDBe 7CFB · UniProt A1ZAC4

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