MolNFT v1 · #175061 · protein
Crystal structure of L-cycloserine-bound form of cysteine desulfurase nifs from helicobacter pylori
7CEU · Cysteine desulfurase iscs: “Crystal structure of L-cycloserine-bound form of cysteine desulfurase nifs from helicobacter pylori”. X-ray diffraction, 1 ligand (7TS), 3 pockets (best druggability 0.45). MolNFT v1 #175061 on GenesisL1…
- PDB
- 7CEU
- Type
- protein
- Length
- 362 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cysteine desulfurase iscs
- EC
- 2.8.1.7
- UniProt
- O25008
- Ligands
- 7TS
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cysteine desulfurase iscs (EC 2.8.1.7) | protein | 362 | 40% helix, 18% strand | O25008 |
Ligands and binding sites
- 7TS · (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate · ligand · chains A
- IPA · Isopropyl alcohol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.45 | 0.83 | 18 | 7TS |
| 2 | 86 | 0.36 | 0.76 | 21 | empty |
| 3 | 65 | 0.28 | 0.73 | 16 | IPA |
Compared structures
- 7CEU · Crystal structure of L-cycloserine-bound form of cysteine desulfurase NifS from… · the same entry in another collection · chain A against A, TM-score 1.00
- O25008 · AlphaFold monomer V2.0 prediction for cysteine desulfurase iscs (O25008) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O25008
- Elsewhere: RCSB PDB 7CEU · PDBe 7CEU · UniProt O25008
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