MolNFT v1 · #174858 · protein
Crystal structure of iscu wild-type
7C8M · Nitrogen-fixing nifu domain protein: “Crystal structure of iscu wild-type”. X-ray diffraction, 1 ligand (FES), 2 pockets (best druggability 0.57). MolNFT v1 #174858 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7C8M
- Type
- protein
- Length
- 256 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nitrogen-fixing nifu domain protein
- UniProt
- A0B757
- Ligands
- FES
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Nitrogen-fixing nifu domain protein | protein | 128 | 50% helix, 22% strand | A0B757 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.57 | 0.79 | 38 | empty |
| 2 | 53 | 0.48 | 0.86 | 19 | empty |
Interfaces
1 interface between chains.
- A–C · 631 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7C8M · Crystal structure of IscU wild-type · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0B757
- Elsewhere: RCSB PDB 7C8M · PDBe 7C8M · UniProt A0B757
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