MolNFT v1 · #17477 · protein
Lecb (pa-lii) calcium-free
1OUS · Hypothetical protein lecb: “Lecb (pa-lii) calcium-free”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.34). MolNFT v1 #17477 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1OUS
- Type
- protein
- Length
- 450 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein lecb
- UniProt
- Q9HYN5
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 3 distinct chains · 0% helix, 69% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein lecb | protein | 113 | 0% helix, 72% strand | Q9HYN5 |
| B, C | Hypothetical protein lecb | protein | 114 | 0% helix, 62% strand | Q9HYN5 |
| D | Hypothetical protein lecb | protein | 109 | 0% helix, 74% strand | Q9HYN5 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.34 | 0.73 | 17 | empty |
| 2 | 101 | 0.32 | 0.72 | 18 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1312 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 1243 Ų buried · 14 hydrogen bonds · protein-protein
- A–D · 525 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 523 Ų buried · 10 hydrogen bonds · protein-protein
- B–D · 218 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 1OUS · Lecb (PA-LII) calcium-free · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HYN5
- Elsewhere: RCSB PDB 1OUS · PDBe 1OUS · UniProt Q9HYN5
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