MolNFT v1 · #17473 · protein
Crystal structure of the periplasmic endonuclease vvn
1OUO: “Crystal structure of the periplasmic endonuclease vvn”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.46). MolNFT v1 #17473 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1OUO
- Type
- protein
- Length
- 210 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nuclease
- EC
- 3.1.-.-
- UniProt
- Q8DCA6
- Ligands
- MG
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclease (EC 3.1.-.-) | protein | 210 | 45% helix, 17% strand | Q8DCA6 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.46 | 0.81 | 21 | empty |
Modifications
Observed in the structure: 5 modified, 4 disulfide (engineered, disulfide).
Compared structures
- 1OUO · Crystal structure of the periplasmic endonuclease Vvn · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DCA6
- Elsewhere: RCSB PDB 1OUO · PDBe 1OUO · UniProt Q8DCA6
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