MolNFT v1 · #174667 · protein
Structure of egk peptide
7C2P · Plant defensing egk: “Structure of egk peptide”. X-ray diffraction, 3 pockets (best druggability 0.54). MolNFT v1 #174667 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7C2P
- Type
- protein
- Length
- 188 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Plant defensing egk
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Plant defensing egk | protein | 47 | 19% helix, 36% strand | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 289 | 0.54 | 0.75 | 27 | empty |
| 2 | 61 | 0.29 | 0.74 | 16 | empty |
| 3 | 52 | 0.27 | 0.74 | 16 | empty |
Interfaces
6 interfaces between chains.
- C–D · 564 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 535 Ų buried · 15 hydrogen bonds · protein-protein
- A–C · 202 Ų buried · 2 hydrogen bonds · protein-protein
- B–D · 169 Ų buried · 0 hydrogen bonds · protein-protein
- A–D · 48 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 disulfide (disulfide).
Compared structures
- 7C2P · Structure of Egk Peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7C2P · PDBe 7C2P
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