MolNFT v1 · #174474 · protein
Yoeb-yefm complex from staphylococcus aureus
7BWF · Addiction module antitoxin relb: “Yoeb-yefm complex from staphylococcus aureus”. X-ray diffraction, 5 pockets (best druggability 0.48). MolNFT v1 #174474 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7BWF
- Type
- protein
- Length
- 357 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Addiction module antitoxin relb; Antitoxin
- UniProt
- A0A3A3ATA4, A0A0B4ND47
- Pockets
- 5 · best druggability 0.48
Structure
x-ray diffraction · 3 distinct chains · 47% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Addiction module antitoxin relb | protein | 87 | 38% helix, 29% strand | A0A3A3ATA4 |
| B | Antitoxin | protein | 92 | 51% helix, 23% strand | A0A0B4ND47 |
| D | Antitoxin | protein | 91 | 51% helix, 22% strand | A0A0B4ND47 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.48 | 0.81 | 13 | empty |
| 2 | 133 | 0.45 | 0.77 | 22 | empty |
| 3 | 60 | 0.37 | 0.79 | 19 | empty |
| 4 | 60 | 0.36 | 0.78 | 15 | empty |
| 5 | 69 | 0.27 | 0.72 | 18 | empty |
Interfaces
5 interfaces between chains.
- B–D · 1876 Ų buried · 22 hydrogen bonds · protein-protein
- C–D · 1755 Ų buried · 31 hydrogen bonds · protein-protein
- A–B · 1750 Ų buried · 34 hydrogen bonds · protein-protein
- B–C · 181 Ų buried · 3 hydrogen bonds · protein-protein
- A–D · 138 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7BWF · YoeB-YefM complex from Staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3A3ATA4
- Every structure of UniProt A0A0B4ND47
- Elsewhere: RCSB PDB 7BWF · PDBe 7BWF · UniProt A0A3A3ATA4 · UniProt A0A0B4ND47
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