MolNFT v1 · #174316 · protein
Crystal structure of ATG40 aim fused to ATG8
7BRN · Autophagy-related protein 40,AUTOPHAGY-related protein 8: “Crystal structure of ATG40 aim fused to ATG8”. X-ray diffraction, 1 ligand (ALE), 1 pocket (best druggability 0.55). MolNFT v1 #174316 on GenesisL1: 3D structure, binding…
- PDB
- 7BRN
- Type
- protein
- Length
- 133 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Autophagy-related protein 40,AUTOPHAGY-related protein 8
- UniProt
- Q99325, P38182
- Ligands
- ALE
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Autophagy-related protein 40,AUTOPHAGY-related protein 8 | protein | 133 | 32% helix, 21% strand | Q99325, P38182 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 334 | 0.55 | 0.75 | 45 | empty |
Compared structures
- 7BRN · Crystal structure of Atg40 AIM fused to Atg8 · the same entry in another collection · chain A against A, TM-score 1.00
- P38182 · AlphaFold monomer V2.0 prediction for autophagy-related protein 8 (P38182) · a predicted model of the same protein · chain A against A, TM-score 0.81
- Q99325 · AlphaFold monomer V2.0 prediction for autophagy-related protein 40 (Q99325) · a predicted model of the same protein · chain A against A, TM-score 0.26
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99325
- Every structure of UniProt P38182
- Elsewhere: RCSB PDB 7BRN · PDBe 7BRN · UniProt Q99325 · UniProt P38182
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